Rookie CIA analyst Alex O'Connor is assigned his first case - to examine the statements of a defecting Russian spy, who claims that rogue elements within her organization are planning a catastrophic attack that will bring America to its knees. Unbeknownst to Alex, his parents, Katya and Mark, are part of the dormant Russian sleeper cell he's investigating, and an unwelcome friend from the past arrives on their doorstep to give them a new mission: turn their son into a spy before his investigation unmasks them. With nowhere to turn, Katya and Mark must choose - flag, or family.
Katya manipulates Alex and makes him think he's mistaken when he almost exposes his parents as spies, but her lies lead to a rift in the family. Meanwhile, Victor is warned to keep the O'Connors under control; and Alex teams up with an FBI agent.
In the aftermath of a unhappy shootout, Alex must convince the FBI to risk a dangerous covert operation to find Mikhail's hidden cache. With Agent Prado at his side, Alex leads a team to Philadelphia to retrieve the laptop from a secure government building, but Victor is a step ahead and orders the O'Connors to break in and steal the laptop first. Meanwhile, Katya discovers one of Natalie's most dangerous secrets, and forces her to choose between love and family. Also starring Scott Cohen, Alex Peters and Kenneth Choi.
A shocking discovery leaves Alex struggling to reconcile his theories with the evidence found at City Hall, and Sam encourages him to keep looking for clues. Meanwhile, Mark and Katya must answer for their actions when the Rezident doubts their commitment to the cause, and Natalie learns just how lethal Black Dagger will be if they don't stop it.
Alex is confronted with the reality of his family's past just as his integrity is questioned at work. The FBI suspects a mole in the organization and brings in Special Agent Faber to investigate. Faced with testifying under oath and submitting to a polygraph test, Alex must for the first time fight against his own moral standards. Meanwhile, Victor (Morgan Spector) finds a new way to keep tabs on the O'Connors, and Natalie makes a critical mistake while tracking down a lead.
Natalie must rely on an outsider to hunt down vital information on Black Dagger and risks Victor discovering her plan. Anxious to detain an SVR source before he escapes the country, Sam and Alex set up a risky sting operation in broad daylight. Meanwhile, Katya asks Alex to help throw the task force off track, and the outcome brings him face to face with Victor. Also starring Scott Cohen and Alex Peters.
The O'Connors send the task force on a wild goose chase to Italy, while Alex tracks down the Black Dagger triggerman. Giancarlo Esposito guest stars.
Victor spies on the Rezident; Alex reveals a big secret to Michelle; and Sam grows increasingly suspicious of the boy genius. Giancarlo Esposito guest stars.
Michelle's shooting puts Alex at odds with the task force. The Black Dagger triggerman makes his next move.
Wanted in connection with Michelle's disappearance, Alex accepts help from an unlikely ally.
Hunted by both the SVR and the FBI, the O'Connors go on the run, desperate to out Faber as the mole before it's too late.
Sam and Alex join forces to find Oscar Christoph; Victor plots to take down the Rezident.
The O'Connors race to stop Black Dagger before it's too late in the nail-biting season finale.