Stardate: 49011 Waking up, Ensign Harry Kim realizes that something is wrong when he sees his girlfriend by his side and the cityscape of San Francisco outside his apartment window. Somehow, he has been removed from Voyager and sent to another place in time. Accessing classified files on the Voyager in this new time and place, he learns that a friend from the ship is also on Earth. Wishing to return to his post, Kim seeks out Tom Paris.
While chasing a renegade Maquis ship in the Badlands, the USS Voyager and the Maquis ship they are chasing are pulled into a vortex, which sends them instantly to the Delta Quadrant. However, after the destruction of the device that transported them to the Delta Quadrant, the crew of Voyager and the crew of the Maquis ship must join together to fight their way back to their home in the Alpha quadrant, which is many years away. They will meet many foes and many obstacles along the way, but they will also bond as a crew, between those of the Maquis and those of Starfleet.