Clone trooper Tup is suffering from a severe neurological disorder that causes the passing of a Jedi master. Trying to find the motives for the sleepytime, Anakin escorts Tup back to Kamino for examination, but then they are attacked by the Separatists...

Clone trooper Tup is undergoing a medical examination in the sterile laboratories of Kamino to find the motives for his shocking attack on the Jedi master. For the examination to succeed, Arc Trooper Fives must enter the depth of Tup's mind, where he finds a secret code manipulation in the cloning program of the Republic.

Clone trooper Tup is transported back to Coruscant, where his body is to be examined by the chancellor's personal physician. Arc Trooper Fives is also investigating the matter and discovers that a modified code has been hidden in the minds of all the clones...

Fives is still trying to find answers regarding the mysterious actions of clone cadet Tup. Hoping to personally speak with chancellor Palpatine, Fives finds himself suddenly accused of trying to cuddle the chancellor and decides to make a run for it.

While on a mercy mission to the planet Scipio, Padmé Amidala's' old flame, Rush Clovis, gets in touch with her asking for help. Having made a stand against the corruption on his planet, Clovis has now become the target of the bounty hunter Embo. Together with Padmé, he is now trying to leave his planet and get help...

Back on Coruscant, Clovis strikes a dubious deal to becomes the leader of his clan which is deeply mired in corruption. Anakin doesn't trust Clovis, causing tensions in his relationship to Padmé.

Having made a deal with Count Dooku, Clovis finds himself drawn into the war. Since it was him who brought the war to his home planet of Scipio, the Republic is now forced to intervene.

The peaceful world of Bardotta finds itself threatened by an ancient prophecy. Since now of all times its spiritual leaders have vanished, Bardotta's people ask their representative in the senate for help. And Jar Jar Binks indeed manages to convince Jedi master Mace Windu that this matter is of grave importance...

Jar Jar Binks' beloved Queen Julia of the planet Bardotta has been abducted by the bloodthirsty Frangawl Cult to fulfill a dark and ancient prophecy. Representative Binks and Jedi Master Windu must find the missing Queen before the cult can rise in power.

A Jedi mission finds a lightsaber belonging to the long-dead Master Sifo-Dyas, prompting Yoda, Obi-Wan Kenobi and Anakin Skywalker to being an investigation into his decade-old disappearance. This sparks Darth Sidious to order Darth Tyranus to clean up any loose ends that may lead the Jedi to discover the truth of the Sith conspiracy.

Yoda is deeply unsettled when he hears a voice from beyond the grave: the voice of Qui-Gon Jinn. Knowing that it is impossible for a Jedi to retain his identity after passing, the Jedi Council begins to worry that Yoda may be corrupted by the influence of the dark side. Determined to find answers, Yoda escapes the Jedi Temple to follow the disembodied voice.

Letting the Force guide him, Yoda voyages into the heart of the galaxy to an ancient world that is one of the wellsprings of the Force. Yoda undergoes difficult trials administered by the Five Priestesses, mysterious Force-wielders who hold the secret to immortality.

After many grueling trials, Yoda next travels to the ancient Sith homeworld now known as Moraband, where he must face an ancient evil determined to rule the galaxy.