Stardate: 54014.4 Janeway and her team endeavour to set the drones free and infiltrate the Borg Cube using special implants, but the Queen will go to any length to prevent her minions regaining their individuality. Tuvok falls prey to the Collective mind and the rest of the group are captured.

Stardate: 54129.4 - Rebi and Azan are reunited with their home worlds, and leave the crew of Voyager. Mezoti is offered the chance to stay with Rebi and Azan, and accepts their invitations to live with them. Seven of Nine is placed in a life-threatening situation when her Borg implants begin to malfunction. The only way she can survive is if they can find replacement parts from a living drone. With Icheb now the last of the remaining Borg children on the ship, he volunteers to offer his implants through a risky procedure that may cost both of their lives.

Stardate: 54058.6 - Paris and Kim volunteer to enter a race that symbolises a peace treaty between four warring races. However, the race's peaceful intentions are undermined with plans of sabotage and cuddle. Torres feels she is nearing the end of her relationship with Paris. However, they work things out with surprising results.

Stardate: 54090.4 - Former members of the Maquis fall victim to a spate of mysterious attacks on board Voyager. Tuvok is placed in charge of the investigations, and soon makes some remarkable discoveries.

Stardate: Unknown The Doctor is abducted and sold to a hospital ship where he is forced to prioritise patients according to their value to society - a situation in direct conflict with his ethical programming.

Stardate: 54208.3 - A hologram of Reginald Barclay is sent to Voyager bringing news that the ship can be returned home in a matter of hours through a 'geodesic fold'. However, the crew becomes suspicious of the holographic Barclay's intentions after seeing him exhibit strange behaviour.

Stardate: 54283.3 - While in the Delta Flyer, the Doctor, Harry Kim and Seven of Nine come under attack for transporting a hologram through Lokirrim space - an act which is strictly forbidden. To hide the doctor, Seven of Nine downloads him into her cybernetic implants shortly before they are taken to a Lokirrim holding cell. On board Voyager, Tuvok enters Pon Farr.

Stardate: 54274.7 - While Voyager stops for maintenance, Harry Kim, Seven and Neelix use the Delta Flyer to search for dilithium, when they come across a war between two alien races. After receiving a distress call from a damaged ship claiming to be on a humanitarian mission, Harry is offered his first chance at commanding a vessel of his own.

Stardate: 54337.5 - The crew of Voyager find a Hirogen training facility, and discover that the hologram technology they gave the Hirogen several months ago was modified to the point where the Holograms are smarter and more cunning than their hunters. The Doctor is abducted by a band of holograms that escaped from the Hirogen facility and is asked to join them in forging a new life as independent 'photonic beings'. The crew of Voyager must ally themselves with the Hirogen to find the Doctor and re-capture the renegade Holograms. After a confrontation with the holograms' ship, Voyager is disabled and B'Elanna is abducted, with the Doctor's help, to aid the Holograms in their plight.

Stardate: 54337.5 - Voyager secretly trails two Hirogen ships in pursuit of the renegade hologram ship. Iden, the band's self-appointed leader, begins showing signs of delusional behaviour when he considers himself as the 'saviour of his people', and believes that his people will worship him as a God in their new settlement. With Voyager and the Hirogen ships trailing close behind, the Doctor and Torres must find a way to disable the ships and the holograms before they come under attack from the Hirogen, and before Iden can execute his plan.

After Voyager passes near a spatial rift, Chakotay is injured in Engineering, leaving his body in a state of temporal flux. After receiving treatment in sickbay, he inadvertently gains the ability to pass through rifts in time that are scattered throughout the ship, enabling him to walk into different stages of Voyager's history over the past seven years.

Stardate: 54452.6 - After receiving the news that she is pregnant with Tom Paris' child, and after learning that the child will have dominant Klingon features, B'Elanna has flashbacks to when she was a child, remembering how difficult her life was because of her Klingon heritage.

Voyager is placed in an ethical dilemma when they encounter a damaged transport ship carrying prisoners. It is revealed that some of the prisoners are being jailed because of their species, and the social misconceptions surrounding them.

Stardate: 54518.2 - Voyager encounters a generational Klingon ship. When the crew of the ship beam over to Voyager after a warp core explosion, they believe that either B'Elanna, or her child is their saviour, as foreseen by their religious scrolls and prophecies.

Stardate: 54553.4 - Voyager is pulled into an empty layer of subspace where ships are forced to attack each other and steal supplies for survival. Voyager's only hope for survival lies in forming alliances with other ships who wish to escape 'the Void'.

Stardate: 54584.3 - The crew of Voyager carry out their normal lives as workers on an industrial planet called Quarra, totally unaware of their time on Voyager or their situation in the Delta Quadrant. Chakotay, Kim and Neelix, return from their trading mission on the Delta Flyer to find the ship abandoned and adrift in a nebula, with only the Doctor on board. The Doctor informs them that the ship fell into a trap which forced them to abandon ship in the escape pods, allowing them to be captured. The Doctor has heard nothing from them since. After going undercover on the planet, Chakotay, Kim, Neelix and the Doctor must now find a way to return the crew and restore their memories, while evading local authorities who have uncovered their plan.

Stardate: 54622.4 - Chakotay must convince Janeway and the other crew members of their past lives on Voyager. Matters are complicated when Chakotay is exposed and taken for interrogation.

When Seven tries to perfect her social skills on the holodeck, her hobby quickly becomes an obsession, which leads her to neglect her duties, placing Voyager in great danger.

Stardate: 54704.5 Q pays a surprise visit to Voyager with his son, Q2. Q wants to leave his son on Voyager to learn more about humanity. However, Q2 with his omnipotent powers proves to be more mettlesome than his father, and soon drives the crew nuts.

Soon however, Q2 settles down and tries to fit in. In a twist, when Q returns he is not pleased with Q2's new attitude, and removes all of Q2's Q powers. Q2 rebels and decides to run away on the Delta Flyer. This action puts the entire crew, especially Icheb's, life at peril when an alien vessel attacks the fleeing Delta Flyer.

Stardate: 54732.3 - A means of direct communication is established with Voyager allowing each crew member to speak with family and friends. The Doctor sends a holo-novel for publication based on a lost starship with a doctor who is treated like a slave, which causes controversy among the members of the ship.

Stardate: 54775.4 Starfleet orders Voyager to retrieve a old space probe launched from Earth many years ago. When they find remnants of the probe on a radiation doomed planet, the also find survivors. They tell the away team the probe lead to the war that doomed their planet. The survivors demand that Voyager relocate them to a habitable planet before they will release the away team.

Stardate: 54827.7 When traveling to a conference on warp field dynamics, on a nearby planet, Chakotay and Seven of Nine do a little sight seeing in the shuttle. The shuttle is destroyed be a strange energy barrier, just after they are able to emergence beam down to the planet. As Chakotay is wounded, Seven goes alone in search of possible usable parts left over from the destroyed shuttle.

However, things get tense when Chakotay is found by the indigenous population of continent, who turn out to be in a primate state of society.

Stardate: 54868.6 - When Voyager discovers a settlement of Talaxians on an asteroid caught in an industrial conflict, the crew manage find a new home for the population. When an armed conflict between the mining operations and the re-settled Talaxians erupts, Neelix is offered a chance of a new life away from Voyager within the colony.

Stardate: 54890.7 The crew of Voyager is conned out of its warp core by none other than the Doctor. The now only impulse capable Voyager, working without Janeway who is missing, must recover the warp core, or their journey will be over. They must figure out what the Doctor's motives are and where he might have gone to.

Stardate: Unknown It's the 10th anniversary of Voyager's triumphant return to Earth from the Delta Quadrant. However, (now) Admiral Janeway is troubled by memories of the losses of friends that they suffered in the later years. Janeway can't except those losses, and has decided to take action; an action which will violate the Prime Directive and temporal directives. If she proceeds, her career will be over; if she succeeds, many lives will be restored, many years taken off the journey, and her recent career will not have existed anyway.

Stardate: 54973.4 At the 10th anniversary of Voyager's triumphant return to Earth from the Delta Quadrant, Admiral Janeway was troubled by memories of the losses of friends that they suffered in the later years. Janeway couldn't except those losses, and had decided to take action; an action which violated the Prime Directive and temporal directives.

Janeway has used illegal means to time travel back to Voyager, and now must convince and maybe force her younger self to trust her on how to speed up their return. This is made more difficult by the younger Janeway's reluctance to believe the older Janeway's idea.