Voyager, in desperate need of Tellerium, which will provide a stabilizer for their warp core, causes Janeway and an away team to beam down to a planet that has a supply of this substance. However, the city they beam to has an occupying force known as the Mokra. Tuvok and Torres are then captured by the Mokra, Neelix escapes back to Voyager with the needed Tellerium, and Janeway escapes only to find a mentally unstable ally, who believes Janeway is his missing daughter.
Now Voyager, with Janeway on the planet with a mentally unstable suspect, must find a way to rescue their fellow crewmen from thier secure prison facility.
While chasing a renegade Maquis ship in the Badlands, the USS Voyager and the Maquis ship they are chasing are pulled into a vortex, which sends them instantly to the Delta Quadrant. However, after the destruction of the device that transported them to the Delta Quadrant, the crew of Voyager and the crew of the Maquis ship must join together to fight their way back to their home in the Alpha quadrant, which is many years away. They will meet many foes and many obstacles along the way, but they will also bond as a crew, between those of the Maquis and those of Starfleet.